Publications

Peer-reviewed

20251 - 20242 - 20233 - 20224 - 20215 - 20206 - 20197 - 20188 - 20179 - 201610 - 201511 - 201412 - 201313 - 201214 - 201115 - 201016 - 200917 - 200818 - 200719 - 200620 - 200521 - 200422 - 200223 - 200124 - 200025 - 199826 - 199627

Not peer-reviewed

Preprints28
Other publications29

2025

Pitz M, Baldauf JA, Piepho HP, Hochholdinger F (2025) Non-additive gene expression contributing to heterosis is predominantly regulated by heterozygous loci in partially heterozygous maize hybrids. New Phytol, in press.

Hochholdinger F, Yu P (2025) Molecular concepts to explain heterosis in crops. Trends Plant Sci 30: 95-104. PubMed30  Free Article31

Richter A, Schroeder A, Marcon C, Hochholdinger Frank, Jander G, Negin B (2025) Catechol acetylglucose: A newly identified benzoxazinoid-regulated defensive metabolite in maize. New Phytol 244: 2474-2488. PubMed32

Custódio V, Salas-González I, Gopaulchan D, Flis P, Amoros R, Gao YQ, Jia X, Moreno A, Carrera E, Marcon C, Hochholdinger F, Oliveira MM, Salt DE, Castrillo G (2025) Individual leaf microbiota tunes a genetic regulatory network to promote leaf growth. Cell Host Microbe, in press.

Guo L, Rosignoli S, Rasmussen MW, Sureshd K, Sangiorgi G, Camerlengo F, Zeisler-Diehl VV, Schreiber L, Dockter C, Pauly M, Tuberosa R, Hochholdinger F*, Salvi S* (2025) HvGLU3 encodes a putative endo-1,4-β-D-glucanase required for cellulose biosynthesis in barley root. Plant Physiol, in press.

Chu L, Shrestha V, Schäfer CC, Niedens J, Meyer GW, Darnell Z, Kling T, Dürr-Mayer T, Abramov A, Frey M, Jessen HJ, Schaaf G, Hochholdinger F, Nowak-Krol A, McSteen P, Angelovici R, Matthes MS (2025) Association of the benzoxazinoid pathway with boron homeostasis in maize. Plant Physiol, 197: kiae611. doi: 10.1093/plphys/kiae611. Epub ahead of print. PMID: 39514757.  PubMed33

Urzinger S, Avramova V, Frey M, Urbany C, Scheuermann D, Presterl T, Reuscher S, Ernst K, Mayer M, Marcon C, Hochholdinger F, Brajkovic S, Ordas B, Westhoff P, Ouzunova M, Schön C-C (2025) Embracing native diversity to enhance maximum quantum efficiency of photosystem II in maize (Zea mays L.). Plant Physiol, kiae670. https://doi.org/10.1093/plphys/kiae67034

Zhao J, Chen Y, Tao Q, Schreiber L, Suresh K, Frei M, Alam MS, Li B, Zhou Y, Baer M, Hochholdinger F, Wang C, Yu P (2025) Enhanced CO2 coordinates the spatial recruitment of diazotrophs in rice via root development. Plant Cell Environ. doi: 10.1111/pce.15259. Epub ahead of print. PMID: 39526402. PubMed3533

He X, Hochholdinger F, Chen X, Yu P (2025) Crop domestication and improvement reshape root trais and their associated microbiome structure and function. Front Agri Sci Eng (FASE), in press.32

2024

Yu P, Li C, Li M, He X, Wang D, Li H, Marcon C, Li Y, Perez-Limón S, Chen X, Delgado-Baquerizo M, Koller R, Metzner R, van Dusschoten D, Pflugfelder D, Borisjuk L, Plutenko I, Mahon A, Resende Jr MFR, Salvio S, Akale A, Abdalla M, Ali Ahmed M, Bauer FM, Schnepf A, Lobet G, Heymans A, Suresh K, Schreiber L, McLaughlin CM, Li C, Mayer M, Schön C-C, Bernau V, von Wirén N, Sawers RJH, Wang T, Hochholdinger F (2024) Seedling root system adaptation to water availability during maize domestication and global expansion. Nat Genet 56: 1245-1256. PubMed36  Free access to view-only version of the paper37

He X, Wang D, Jiang Y, Li M, Delgado-Baquerizo M, McLaughlin C, Marcon C, Guo L, Baer M, Moya YAT, von Wirén N, Deichmann M, Schaaf G, Piepho H-P, Yang Z, Yang J, Yim B, Smalla K, Goormachtig S, de Vries FT, Hüging H, Baer M, Sawers RJH*, Reif JC*, Hochholdinger F*, Chen X*, Yu P* (2024) Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nat Plants 10: 598–617. 38PubMed3940343533

Win YN, Stöcker T, Du X, Brox A, Pitz M, Klaus A, Piepho H-P, Schoof H, Hochholdinger F, Marcon C (2024) Expanding the BonnMu sequence-indexed repository of transposon induced maize (Zea mays L.) mutations in dent and flint germplasm. Plant J 120: 2253-2268.  PubMed41  Free PMC article4232

Zhou Y, Sommer ML, Meyer A, Wang D, Klaus A, Stöcker T, Marcon C, Schoof H, Haberer G, Schön C-C, Yu P, Hochholdinger F (2024) Cold mediates maize root hair developmental plasticity via epidermis-specific transcriptomic responses. Plant Physiol 196: 2105-2120. PubMed43

Yu B, Zhou C, Wang Z, Bucher M, Schaaf G, Sawers RJH, Chen X, Hochholdinger F, Yu P (2024) Maize zinc uptake is influenced by arbuscular mycorrhizal symbiosis under various soil phosphorus availabilities. New Phytol 243: 1936-1950. PubMed44

Wang D, He X, Baer M, Lami K, Yu B, Tassinari A, Salvi S, Schaaf S, Hochholdinger F, Yu P (2024) Lateral root enriched Massilia associated with plant flowering in maize. Microbiome 12: 124. PubMed45  Free Article46

Kirschner GK, Hochholdinger F, Salvi S, Bennett MJ, Huang G, Bhosale RA (2024) Genetic regulation of the root angle in cereals. Trends Plant Sci  23: 1360-1385.  PubMed47  Free Article48

Klaus A, Marcon C, Hochholdinger F (2024) Spatiotemporal transcriptomic plasticity in barley roots: Unravelling water deficit responses in distinct root zones. BMC Genomics 25: 79. PubMed49  Free BMC Article50  Free PMC Article51

Bohle F, Klaus A, Ingelfinger J, Tegethof H, Safari N, Schwarzländer M, Hochholdinger F, Hahn M, Meyer AJ, Acosta IF, Müller-Schüssele SJ (2024) Contrasting cytosolic EGSH dynamics under abiotic and biotic stress in barley as revealed by the biosensor Grx1-roGFP22. J Exp Bot 75: 2299-2312. PubMed52  Free Article53

Baales J, Zeisler-Diehl VV, Kreszies T, Klaus A, Hochholdinger F, Schreiber L (2024) Transcriptomic changes in barley leaves induced by alcohol ethoxylates indicate potential pathways of surfactant detoxification. Sci Rep 14: 4535. PubMed54  Free PMC Article55

Hochholdinger F, Yu P, Feix G (2024) Genetic Analysis of Maize Root Development. In: Plant Roots – The Hidden Half. 5th edition, chapter 11, pp. 185-199.

Marcon C, Win YN, Du X, Hochholdinger F (2024) BonnMu: a resource for functional genetics in maize (Zea mays L.). Cold Spring Harb Protoc. https://doi.org/10.1101/pdb.top10846556

Marcon C, Brox A, Win YN, Stöcker T, Du X, Schoof H, Hochholdinger F (2024) Identification of transposon insertion sites in maize Mu-tagged mutants using Mu-seq. Cold Spring Harb Protoc. https://doi.org/10.1101/pdb.prot10858657

Win YN, Pöschel M, Stöcker T, Du X, Klaus A, Braun BW, Lukas L, Brox A, Schoof H, Hochholdinger F, Marcon C (2024) Use of maize (Zea mays L.) Mutator transposon-induced mutants of the BonnMu resource for forward and reverse genetics studies. Cold Spring Harb Protoc. https://doi.org/10.1101/pdb.prot10858758

2023

Zhao M, Peng Z, Qin Y, Tamang TM, Zhang L, Tian B, Chen Y, Liu Y, Zhang J, Lin G, Zheng H, He C, Lv K, Klaus A, Marcon C, Hochholdinger F, Trick HN, Liu Y, Cho MJ, Park S, Wei H, Zheng J, White FF, Liu S (2023) Bacterium-Enabled Transient Gene Activation by Artificial Transcription Factors to Study Gene Regulation in Maize. Plant Cell 35: 2736-2749. PubMed59  Free Article60

Guo L, Osthoff A, Baer M, Kirschner G, Salvi S, Hochholdinger F (2023) ENHANCED GRAVITROPISM 2 coordinates molecular adaptations to gravistimulation in the elongation zone of barley roots. New Phytol 237: 2196-2209. PubMed61  Free Article62

Baer M, Taramino G, Multani D, Sakai, H, Jiao S, Fengler K, Hochholdinger F (2023) Maize lateral rootless 1 encodes a homolog of the DCAF protein subunit of the CUL4-based E3 ubiquitin ligase complex. New Phytol 237: 1204–1214. PubMed63  Free Article64

Baldauf JA, Hochholdinger F (2023) Molecular dissection of heterosis in roots and their rhizosphere. Theor Appl Genetics 136(173): 1-11.PubMed65  Free PMC Article66

Yu P, Hochholdinger F (2023) Genetic and environmental regulation of root growth and development. Chapter 13 in: Marschner´s Mineral Nutrition of Plants. 4th edition 23: 523-543. Abstract67

2022

Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem JK, Borkar AN, Lombardi M, Forestan C, Milner SG, Davis JL, Lale A, Kirschner GK, Swarup R, Tassinari A, Pandey BK, York LM, Atkinson BS, Sturrock CJ, Mooney SJ, Hochholdinger F, Tucker MR, Himmelbach A, Stein N, Mascher M, Nagel K, De Gara L, Simmonds J, Uauy C, Tuberosa R, Lynch JP, Yakubov GE, Bennett M, Bhosale R, Salvi S (2022) Root angle is controlled by EGT1 in cereal crops employing a novel anti-gravitropic mechanism. Proc Nat Acad Sci 119: e2201350119. PubMed68  Free PMC article69

Baldauf JA, Liu M, Vedder L, Yu P, Piepho H-P, Schoof H, Nettleton D, Hochholdinger F (2022) Single parent expression complementation contributes to phenotypic heterosis in maize hybrids. Plant Physiol 189: 1625-1638. PubMed70  Free PMC article71

Shellakkutti N, Thangamani PD, Suresh K, Baales J, Zeisler-Diehl VV, Osthoff A, Hochholdinger F, Schreiber L, Kreszies T (2022) Cuticular transpiration is not affected by enhanced wax and cutin amounts in response to osmotic stress in barley. Physiol Plant 174: e13735. PubMed72  Free Article73

Stöcker T, Altrogge L, Marcon C, Win YN, Hochholdinger F, Schoof H (2022) MuWU: Mu-seq library analysis and annotation. Bioinformatics 38: 837-838. PubMed74  Free PMC article75

2021

Yu P, He X, Baer M, Beirinckx S, Tian T, Moya YAT, Zhang Y, Deichmann M, Frey FP, Bresgen V, Li C, Razavi BS, Schaaf G, von Wirén N, Su Z, Bucher M, Tsuda K, Goormachtig S, Chen X, Hochholdinger F (2021) Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation. Nat Plants 7: 481–499. PubMed76

Kirschner GK, Rosignoli S, Guo L, Vardanega I, Imani J, Altmüller J, Milner SG, Balzano R, Nagel KA, Pflugfelder D, Forestan C, Bovina R, Koller R, Stöcker TG, Mascher M, Simmonds J, Uauy C, Schoof H, Tuberosa R, Salvi S, Hochholdinger F (2021) ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIVE containing protein that controls root growth angle in barley and wheat. Proc Nat Acad Sci 118: e2101526118. PubMed77 Free PMC Article78

Zhou Y, Sommer ML, Hochholdinger F (2021) Cold response and tolerance in cereal roots. J Exp Bot 72: 7474-7481. PubMed79  Free article80

Bonkowski M, Tarkka MT, Razavi BS, Schmidt H, Blagodatskaya E, Koller R, Yu P, Knief C, Hochholdinger F, Vetterlein D (2021) Spatiotemporal dynamics of maize (Zea mays L.) root growth and its potential consequences for the assembly of the rhizosphere microbiota. Front Microbiol 17: 619499. PubMed81 Free PMC Article82

Rüger L, Feng K, Dumack K, Chen Y, Sun R, Wilson M, Yu P, Sun B, Deng Y, Hochholdinger F, Vetterlein D, Bonkowski M (2021) Assembly patterns of the rhizosphere microbiome along the longitudinal root axis of maize (Zea mays L.). Front Microbiol 12: 614501. PubMed83 Free Article84

2020

Haberer G, Kamal N, Bauer E, Gundlach H, Fischer I, Seidel MA, Spannagl M, Marcon C, Ruban A, Urbany C, Nemri A, Hochholdinger, F, Ouzunova, M, Houben A, Schön C-C, Mayer KFX (2020) European maize genomes highlight intra-species variation in repeat and gene content. Nature Genet 52: 950–957. PubMed85  Free PMC Article86

Marcon C, Altrogge L, Win Y, Stöcker T, Gardiner J, Portwood J, Opitz N, Kortz A, Baldauf J, Hunter C, McCarty D, Koch K, Schoof H, Hochholdinger F (2020) BonnMu: a sequence-indexed resource of transposon induced maize mutations for functional genomics studies. Plant Physiol 184: 620-631. PubMed87  Free Article88

Zheng Z, Hey S, Jubery T, Liu H, Yang Y,  Coffey L, Miao C, Sigmon B, Schnable J, Hochholdinger F, Ganapathysubramanian P, Schnable PS (2020) Shared genetic control of root system architecture between Zea mays and Sorghum bicolor. Plant Physiol 182: 977-991. PubMed89  Free Article90

Baldauf JA, Vedder L, Schoof H, Hochholdinger F (2020) Robust non-syntenic gene expression patterns in diverse maize hybrids during root development. J Exp Bot 71: 865–876. PubMed91

Vetterlein D, Lippold E, Schreiter S, Phalempin M, Fahrenkampf T, Hochholdinger F, Marcon C, Tarkka M, Oburger E, Ahmed M, Javaux M, Schlüter S (2020) Experimental platforms for the investigation of spatiotemporal patterns in the rhizosphere - laboratory and field scale. J Plant Nutr Soil Sc 184: 35-50. Free Article92

Frey FP, Pitz M, Schön CC, Hochholdinger F (2020) Transcriptomic diversity in seedling roots of European flint maize in response to cold. BMC Genomics 21: 300. PubMed93  Free Article94

Kreszies T, Eggels S, Kreszies V, Osthoff A, Shellakkutti N, Baldauf JA, Zeisler-Diehl VV, Hochholdinger F, Ranathunge K, Schreiber L (2020) Seminal roots of wild and cultivated barley differentially respond to osmotic stress in gene expression, suberization and hydraulic conductivity. Plant Cell Environ 43: 344-357. PubMed95  Free Article96

2019

Kreszies T, Shellakkutti N, Osthoff A, Yu P, Baldauf J, Zeisler-Diehl V, Ranathunge K, Hochholdinger F, Schreiber L (2019) Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses. New Phytol 221: 180-194. PubMed97  Free PMC Article98

Osthoff A, Donà dalle Rose P, Baldauf JA, Piepho H-P, Hochholdinger F (2019) Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress. BMC Genomics 20: 325. PubMed99  Free Article100

Kortz A, Hochholdinger F, Yu P (2019) Cell type-specific transcriptomics of lateral root formation and plasticity. Front Plant Sci 10: 21. Free Article101

Yu P, Hochholdinger F, Li C (2019) Plasticity of lateral root branching in maize. Front Plant Sci 10: 363. PubMed102  Free PMC Article103

Klamer F, Vogel F, Li X, Bremer H, Neumann G, Neuhäuser B, Hochholdinger F, Ludewig U (2019) Estimating the importance of maize root hairs in low phosphorus conditions and under drought. Ann Bot 124: 961-968.  PubMed104  Free PMC Article105

2018

Baldauf J, Marcon C, Lithio A, Vedder L, Altrogge L, Piepho H-P, Schoof H, Nettleton D, Hochholdinger F (2018) Single-parent expression is a general mechanism that drives extensive complementation of non-syntenic genes in maize (Zea mays L.) hybrids. Current Biol 28: 431-437. PubMed106  Free Article107

Hochholdinger F, Baldauf J (2018) Heterosis in Crop Plants. Current Biol 28: R1089-R1092.  PubMed108  Free Article109

Hochholdinger F, Yu P, Marcon C (2018) Genetic control of root system development in maize. Trends in Plant Sci 23: 79-88.  PubMed110

Yu P, Wang C, Baldauf J, Tai H, Gutjahr C, Hochholdinger F, Li C (2018) Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots. New Phytol 217: 1240-1253. PubMed111  Free Article112

Ashrafuzzaman M, Haque Z, Ali B, Mathew B, Yu P, Hochholdinger F, de Abreu Neto JB, McGillen MR, Ensikat H-J,  Manning WJ, Frei M (2018) Ethylenediurea (EDU) mitigates the negative effects of ozone in rice: insights into its mode of action. Plant Cell Env 41: 2882-2898.  PubMed113  Free Article114

Yu P, Hochholdinger F (2018) The role of host genetic signatures on root-microbe interactions in the rhizosphere and endosphere. Front Plant Sci 9: 1896.  PubMed115  Free PMC Article116

Hochholdinger F, Marcon C, Baldauf J, Frey F, Yu P (2018) Proteomics of Maize Root Development. Front Plant Sci 9: 143.  PubMed117  Free PMC Article118

Yu P, Marcon C, Baldauf JA, Frey F, Baer M, Hochholdinger F (2018) Transcriptomic dissection of maize root system development. Compendium of plant genomes: The Zea mays Genome. 1st ed. (eds. J. Bennetzen, S. Flint-Garcia, C. Hirsch and R. Tuberosa) pp. 247-257. Springer Nature.  Link119

Weber NF, Herrmann I, Hochholdinger F, Ludewig U, Neumann G (2018) PGPR-induced growth stimulation and nutrient acquisition in maize: do root hairs matter? Sci Agric Bohem 49: 164–172.

2017

Marcon C, Paschold A, Malik WA, Lithio A, Baldauf JA, Altrogge L, Opitz N, Lanz C, Schoof H, Nettleton D, Piepho H-P, Hochholdinger F (2017) Stability of single-parent gene expression complementation in maize hybrids upon water deficit stress. Plant Physiol 173: 1247-1257.  PubMed120  Free PMC Article121

Hey S, Baldauf J, Opitz N, Lithio A, Pasha A, Provart N, Nettleton D, Hochholdinger F (2017) Complexity and specificity of the maize (Zea mays L.) root hair transcriptome. J Exp Bot 68: 2175-2185. PubMed122  Free PMC Article123

Tai H, Opitz N, Litho A, Lu X, Nettleton D, Hochholdinger F (2017) Non-syntenic genes drive RTCS-dependent regulation of the embryo transcriptome during formation of seminal root primordia in maize (Zea mays L.) J Exp Bot 68: 403-414. PubMed124  Free PMC Article125

2016

Sebastian J, Yee MC, Viana WG, Rellán-Álvarez R, Feldman M, Priest H, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR (2016) Grasses suppress shoot-borne roots to conserve water during drought. Proc Nat Acad Sci USA 113: 8861-8866. PubMed126  Free PMC Article127

Yu P, Gutjahr C, Li C, Hochholdinger F (2016) Genetic control of lateral root formation in cereals. Trends Plant Sci 21: 951-961. PubMed128

Xu C, Luo F, Hochholdinger F (2016) LOB domain proteins: beyond lateral organ boundaries. Trends Plant Sci 21: 159-167. PubMed129

Baldauf JA, Marcon C, Paschold A, Hochholdinger F (2016) Nonsyntenic genes drive tissue-specific dynamics of differential, nonadditive and allelic expression patterns in maize hybrids. Plant Physiol 171: 1144-1155. PubMed130  Free PMC Article131

Yu P, Baldauf JA, Lithio A, Marcon C, Nettleton D, Li C, Hochholdinger F (2016) Root type specific reprogramming of maize pericycle transcriptomes by local high nitrate results in disparate lateral root branching patterns. Plant Physiol 170: 1783-1798. PubMed132  Free PMC Article133

Tai H, Lu X, Opitz N, Marcon C, Paschold A, Lithio A, Nettleton D, Hochholdinger F (2016) Transcriptomic and anatomic complexity of primary, seminal and crown roots highlight root type-specific functional diversity in maize (Zea mays L.). J Exp Bot 67: 1123-1135. PubMed134  Free PMC Article135

Hochholdinger F (2016) Untapping root system architecture for crop improvement. J Exp Bot 67: 4431-4433. PubMed136  Free PMC Article137

Opitz N, Marcon C, Paschold A, Malik WA, Lithio A, Brandt R, Piepho H-P, Nettleton D, Hochholdinger F (2016) Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit. J Exp Bot 67: 1095-1107. PubMed138  Free PMC Article137

Zhang Y, Marcon C, Tai H, von Behrens I, Ludwig Y, Hey S, Berendzen KW, Hochholdinger F (2016) Conserved and unique features of the homeologous maize Aux/IAA proteins ROOTLESS WITH UNDETECTABLE MERISTEM 1 and RUM1-like 1. J Exp Bot 67: 1137-1147. PubMed139  Free PMC Article140

Li L, Hey S, Liu S, Liu Q, McNinch C, Hu HC, Wen TJ, Marcon C, Paschold A, Bruce W, Schnable PS, Hochholdinger F (2016) Characterization of maize roothairless6 which encodes a D-type cellulose synthase and controls the switch from bulge formation to tip growth. Sci Rep 6: 34395.  PubMed141  Free PMC Article142

Anjam MS, Ludwig Y,  Hochholdinger F,  Miyaura C, Inada M, Siddique S, Grundler FMW (2016) An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection. Plant Meth 12: 25.  PubMed143  Free PMC Article144

2015

Xu C, Tai H, Saleem M, Ludwig Y, Majer C, Berendzen K, Nagel K, Wojciechowski T, Meeley R, Taramino G, Hochholdinger F (2015) Cooperative action of the paralogous maize LOB domain proteins RTCS and RTCL in shoot-borne root formation. New Phytol 207: 1123-1133. PubMed145  Free Article146

Yu P, Eggert K, von Wirén N, Li C, Hochholdinger F (2015) Cell-type specific gene expression analyses by RNA-Seq reveal local high nitrate triggered lateral root initiation in shoot-borne roots of maize by modulating auxin-related cell cycle-regulation. Plant Physiol 169: 690-704. PubMed147  Free PMC Article148

Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho H-P, Briggs SP, Hochholdinger F (2015) A high resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axis. Plant Physiol 168: 233-246. PubMed149  Free PMC Article150

Zhang Y, von Behrens I, Zimmermann R, Ludwig Y, Hey S, Hochholdinger F (2015) LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signaling downstream of the Aux/IAA gene rootless with undetectable meristem 1. J Exp Bot 66: 3855-3863. PubMed151  Free Article152

Yu P, Hochholdinger F, Li C (2015) Root-type-specific plasticity in response to localized high nitrate supply in maize (Zea mays). Ann Bot 116: 751-762. PubMed153  Free PMC Article154

2014

Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F (2014) Non-syntenic genes drive highly dynamic complementation of gene expression in maize hybrids. Plant Cell 26: 3939-3948. PubMed 155 Free PMC Article155

Nestler J, Liu S, Wen T-J, Paschold A, Marcon C, Tang HM, Li D, Li L, Meeley R, Sakai H, Bruce W, Schnable PS, Hochholdinger F (2014) Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. Plant J 79: 729-740. PubMed156  Free Article157

Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F (2014) The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.)  primary roots. J Exp Bot 65: 4919-4930. PubMed158  Free PMC Article159

Opitz N, Paschold A, Marcon C, Malik WA, Lanz C, Piepho HP, Hochholdinger F (2014) Transcriptomic complexity in young maize primary roots in response to low water potentials. BMC Genomics 15: 741. PubMed160  Free Article161

Ludwig Y, Berendzen KW, Xu C, Piepho H-P, Hochholdinger F (2014) Diversity of Stability, Localization, Interaction and Control of Downstream Gene Activity in the Maize Aux/IAA Protein Family. PLoS ONE 9: e107346. PubMed162  Free Article163

Yu P, White PJ, Hochholdinger F, Li C (2014) Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability. Planta 240: 667-678. PubMed164

Kumar B, Abdel-Ghani AH, Pace J, Reyes-Matamoros J, Hochholdinger F, Lübberstedt T (2014) Association analysis of single nucleotide polymorphisms in candidate genes with root traits in maize (Zea mays L.) seedlings. Plant Sci 224: 9-19. PubMed165

Ludwig Y, Hochholdinger F (2014) Laser microdissection of plant cells. Meth Mol Biol 1080: 249-258. PubMed166

2013

Muthreich N, Majer C, Beatty M, Paschold A, Schützenmeister A, Fu Y, Malik WA, Schnable PS, Piepho H-P, Sakai H, Hochholdinger F (2013) Comparative transcriptome profiling of maize (Zea mays L.) coleoptilar nodes during shoot-borne root initiation. Plant Physiol 163: 419-430. PubMed167  Free article168

Ludwig Y, Zhang Y, Hochholdinger F (2013) The maize (Zea mays L.) AUXIN/INDOLE-3-ACETIC ACID gene family: phylogeny, synteny, and unique root-type and tissue-specific expression patterns during development. PLoS ONE 8: e78859. PubMed169  Free PMC Article170

Marcon C, Lamkemeyer T, Malik WA, Ungrue D, Piepho H-P, Hochholdinger F (2013) Heterosis-associated proteome analyses of maize (Zea mays L.) seminal roots by quantitative label-free LC-MS. J Proteomics 93: 295-302. PubMed171

Husakova E, Hochholdinger F, Soukup A (2013) Lateral root development in the maize (Zea mays) lateral rootless1 mutant. Ann Bot 112: 417-428. PubMed172  Free PMC Article173

Marcon C, Paschold A, Hochholdinger F (2013) Genetic control of root organogenesis in cereals. Meth Mol Biol 959: 69-81.  PubMed174

Hochholdinger F, Nestler J (2013) Plant Root Development, Genetics and Genomics Of. In: Maloy S and  Hughes  K (ed.) Brenner's Encyclopedia of Genetics, vol. 5, pp. 349-352. Elsevier: New York.  Link175

Hochholdinger F, Feix G (2013) Genetic analysis of maize root development. In Plant roots the hidden half. 4th ed., Marcel Dekker, New York, Inc, 10: 1-8.  Link176

2012

Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F (2012) Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res 22: 2445-2454. PubMed177  Free PMC Article178

De Smet I, White P, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F, Draye X, Zhang H, Broadley MR, Péret B, Hammond JP, Fukaki H, Mooney S, Lynch JP, Malamy JE, Nacry P, Schurr U, Laplaze L, Benfey P, Beeckman T, Bennett M (2012) Analyzing lateral root development: how to move forward. Plant Cell 24: 15-20. PubMed179  Free PMC Article180

Majer C, Xu C, Berendzen KW, Hochholdinger F (2012) Molecular interactions of RTCS, a LOB domain protein regulating shoot-borne root initiation in maize (Zea mays L.).  Phil Trans R Soc B 367: 1542-1451. PubMed181  Free PMC Article182

Liao C, Hochholdinger F, Li C (2012) Comparative Analyses of three Legume Species Reveals Conserved and Unique Root Extracellular Proteins. Proteomics 12: 3219-3228. PubMed183  Link184

Kumar B, Abdel-Ghani AH, Reyes Matamoros JM, Hochholdinger F, Lübberstedt T (2012) Genotypic variation for root architecture traits in seedlings of maize (Zea mays L.) inbred lines. Plant Breed 131: 465-478. Journal website185  Link186

2011

von Behrens I, Komatsu M,  Zhang Y, Berendzen KW, Niu X, Sakai H, Taramino G,  Hochholdinger F (2011) Rootless with undetectable meristem1 encodes a monocot-specific AUX/IAA protein that controls embryonic seminal and postembryonic lateral root initiation in maize. Plant J 66: 341-353. PubMed187  Free Article188

Nestler J, Schütz W, Hochholdinger F (2011) Conserved and unique features of the maize root hair proteome. J Proteome Res 10: 2525-2537. PubMed189  Link190

Majer C, Hochholdinger F (2011) Defining the boundaries: structure and function of LOB-domain proteins. Trends Plant Sci 16: 47-52. PubMed191

2010

Zimmermann R, Sakai H, Hochholdinger F (2010) The gibberelic acid stimulated-like gene family in maize (Zea mays L.) and its role in lateral root development. Plant Physiol 152: 356-365. PubMed192  Free PMC Article193

Saleem M, Lamkemeyer T, Schutzenmeister A, Madlung J, Sakai H, Piepho HP, Nordheim A, Hochholdinger F (2010) Specification of cortical parenchyma and stele of maize (Zea mays L.) primary roots by asymmetric levels of auxin, cytokinin and cytokinin-regulated proteins. Plant Physiol 152: 4-18. PubMed194  Free PMC Article195

Marcon C, Schützenmeister A, Schütz W, Madlung J, Piepho H-P, Hochholdinger F (2010) Non-additive protein accumulation patterns in maize (Zea mays L.) hybrids during embryo development. J Proteome Res 9: 6511-6522. PubMed196  Link197

Ma W, Muthreich N, Liao C, Franz-Wachtel M, Schütz W, Zhang F, Hochholdinger F, Li C (2010) The mucilage proteome of maize (Zea mays L.) primary roots. J Proteome Res 9: 2968-2976. PubMed198  Link199

Muthreich N, Schützenmeister A, Schütz W, Madlung J, Krug K, Nordheim A, Piepho H-P, Hochholdinger F (2010) Regulation of the maize (Zea mays L.) embryo proteome by RTCS which controls seminal root initiation. Eur J Cell Biol 89: 242-249. PubMed200

Liu Y, von Behrens I, Muthreich N, Schütz W, Nordheim A, Hochholdinger F (2010) Regulation of the pericycle proteome in maize (Zea mays L.) primary roots by RUM1 which is required for lateral root initiation. Eur J Cell Biol 89: 236-241. PubMed201

Paschold A, Marcon C, Hoecker N, Hochholdinger F (2010) Molecular dissection of heterosis manifestation during early maize root development. Theor Appl Genet 120: 383-388. PubMed202  Free Article203

2009

Saleem M, Lamkemeyer T, Schuetzenmeister A, Fladerer C, Piepho H-P, Nordheim A, Hochholdinger F (2009) Tissue specific control of the maize (Zea mays L.) embryo, cortical parenchyma, and stele proteomes by RUM1 which regulates seminal and lateral root initiation. J Proteome Res 8: 2285-2297. PubMed204  Link205

Hochholdinger F, Zimmermann R (2009) Molecular and genetic dissection of cereal root development. Ann Plant Rev 37: 175–191.  Link206

Hochholdinger F (2009) The Maize Root System: Morphology, Anatomy and Genetics. In The Handbook of Maize (eds J. Bennetzen, S. Hake) pp. 145-160. Springer, New York, Inc. Link207

Hochholdinger F, Tuberosa R (2009) Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol 12: 172-177. PubMed208

2008

Hála M, Cole R, Synek L, Drdova E, Pecenkova T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, Zarsky V (2008) An exocyst complex functions in plant cell growth. Plant Cell 20: 1330-45. PubMed209  Free PMC Article210

Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS (2008) The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. Plant J 54: 888-98. PubMed211  Free PMC Article212

Hochholdinger F, Zimmermann R (2008) Conserved and diverse mechanisms in root development. Curr Opin Plant Biol 11: 70-74.   PubMed213

Hoecker N, Lamkemeyer T, Sarholz B, Paschold A, Fladerer C, Madlung J, Wurster K, Stahl M, Piepho H-P, Nordheim A, Hochholdinger F (2008) Analysis of non-additive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics 8: 3882–3894. PubMed214  Link215

Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho H-P, Hochholdinger F (2008) Comparison of maize (Zea mays L.)  F1-hybrid and parental inbred line primary root transcriptomes suggests organ specific patterns of non-additive gene expression and conserved expression trends between different hybrids. Genetics 179: 1275-1283. PubMed216  Free PMC article217

2007

Taramino G, Sauer M, Stauffer J, Multani D, Niu X, Sakai H, Hochholdinger F (2007) The maize (Zea mays L.) RTCS gene encodes a LOB domain protein that is a key regulator of embryonic seminal and post-embryonic shoot-borne root initiation. Plant J 50: 649-659. PubMed218  Free Article219

Dembinsky D, Woll K, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim N, Nettleton D, Schnable PS, Hochholdinger F (2007) Transcriptomic and proteomic analyses of pericycle cells of the maize (Zea mays L.) primary root. Plant Physiol 145: 575-588. PubMed220  Free PMC Article221

Hochholdinger F, Hoecker N (2007) Towards the molecular basis of heterosis. Trends Plant Sci 12: 427-432. PubMed222  Link223

2006

Liu Y, Lamkemeyer T, Jakob A, Mi G, Zhang F, Nordheim A, Hochholdinger F (2006) Comparative proteome analyses of maize (Zea mays L.) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1. Proteomics 6: 4300-4308. PubMed224  Link225

Woll K, Dressel A, Sakai H, Piepho H-P, Hochholdinger F (2006) The root tip specific gene ZmGrp3: A novel marker for root initiation and a model to study allelic contribution to gene expression in maize (Zea mays L.) primary roots. Theor Appl Genet 113: 1305-1315.  PubMed226  Free Article227

Sauer M, Jakob A, Nordheim A, Hochholdinger F (2006) Proteomic analysis of shoot-borne root initiation in maize (Zea mays L.). Proteomics 6: 2530-2541. PubMed228  Link229

Hoecker N, Keller B, Piepho H-P, Hochholdinger F (2006) Manifestation of heterosis during early maize (Zea mays L.) root development. Theor Appl Genet 112: 421-429. PubMed230  Free Article231

Piepho H-P, Keller B, Hoecker N, Hochholdinger F (2006) Combining signals from spotted maize (Zea mays L.) cDNA microarrays obtained at different scanning intensities. Bioinformatics 22: 802-807. PubMed232

Hochholdinger F, Sauer M, Dembinsky D, Hoecker N, Muthreich N, Saleem M, Liu Y (2006) Proteomic dissection of plant development. Proteomics 6: 4076-4083. PubMed233  Link234

Schlicht M, Strnad M, Scanlon M, Mancuso S, Hochholdinger F, Palme K, Volkmann D, Menzel D, Baluska F (2006) Auxin immunolocalization implicates vesicular neurotransmitter-like mode of polar auxin transport in root apices. Plant Signal Behav 1: 122-133. PubMed235  Free PMC Article236

2005

Woll K, Borsuk L, Stransky H, Nettleton D, Schnable PS, Hochholdinger F (2005) Isolation, characterization and pericycle specific transcriptome analyses of the novel maize (Zea mays L.) lateral and seminal root initiation mutant rum1. Plant Physiol 139: 1255-1267. PubMed237  Free PMC Article238

Wen TJ, Hochholdinger F, Sauer M, Bruce W, Schnable PS (2005) The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol 138: 1637-1643. PubMed239  Free PMC Article240

Hochholdinger F, Woll K, Guo L, Schnable PS (2005) The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics 18: 4885-4893. PubMed241

Keller B, Emrich K, Hoecker N, Sauer M, Hochholdinger F, Piepho H-P (2005) Designing a microarray experiment to estimate dominance in maize (Zea mays L.). Theor Appl Genet 111: 57-64. PubMed242

Hochholdinger F, Woll K, Sauer M, Feix G (2005) Functional genomic tools in support of the genetic analysis of root development in maize (Zea mays L.). 50th anniversary edition of Maydica 50: 437-442. Free Article243

Jung S, Hwang I, Hochholdinger F, Oh YJ, Lee Y, Eun MY, Park WJ (2005) Progress in the genetic studies on root development in Oryza sativa. J Nano Bio Tech 2:66-70. Link244  Free article245

2004

Hochholdinger F, Guo L, Schnable PS (2004) Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. Plant J 37: 199-208. PubMed246  Free article247

Schnable PS, Hochholdinger F, Nakazono M (2004) Global Expression Profiling Applied to Plant Development. Curr Opin Plant Biol 7: 50-56. PubMed248

Hochholdinger F, Park WJ, Sauer M, Woll K (2004) From weeds to crops: genetic analysis of root development in cereals. Trends Plant Sci 9: 42-48. PubMed249

Hochholdinger F, Guo L, Schnable PS (2004) Lateral roots affect the proteome of the primary root of maize (Zea mays L.). Plant Mol Biol 56: 397-412. PubMed250

Hochholdinger F, Woll K, Sauer M, Dembinsky D (2004) Genetic dissection of root formation in maize (Zea mays L.) reveals root-type specific developmental programs. Annals Bot 93: 359-368. PubMed251  Free PMC article252

Park WJ, Hochholdinger F, Gierl A (2004) Release of defense molecules the benzoxazinoids during lateral- and crown root emergence in Zea mays. J Plant Physiol 161: 981-985. PubMed253

2002

Feix G, Hochholdinger F, Park WJ (2002) Maize root system and Genetic Analysis of ist formation. In Plant roots the hidden half. 3rd ed. (eds Y. Waisel, A. Eshel and U. Kafkafi) pp. 239-248. Marcel Dekker, New York, Inc  Link254

2001

Hochholdinger F, Park W-J, Feix G (2001) Cooperative action of SLR1 and SLR2 is required for lateral root specific cell-elongation in maize. Plant Physiol 125: 1529-1539. PubMed255  Free PMC article256

2000

Hochholdinger F, Wulff D, Reuter K, Park W-J, Feix G (2000) Tissue specific expression of AUX1 in maize roots. J Plant Physiol 157: 315-319. Link257

1998

Hochholdinger F, Feix G (1998) Early post-embryonic root formation is specifically affected in the maize mutant lrt1. Plant J 16: 247-255. Link258  Free article259

Hochholdinger F, Feix G (1998) Cyclin expression is completely suppressed at the site of crown root formation in the nodal region of the maize root mutant rtcs. J Plant Physiol 153: 425-429. Link260

1996

Hetz W, Hochholdinger F, Schwall M, Feix G (1996) Isolation and characterisation of rtcs, a mutant deficient in the formation of nodal roots. Plant J 10: 845-857. Link261  Free article 262

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